@article{ISI:000266354600005, abstract = {We report a pH-dependent conformational transition in short, defined homopolymeric deoxyadenosines (dA(15)) from a single helical structure with stacked nucleobases at neutral pH to a double-helical, parallel-stranded duplex held together by AH-HA base pairs at acidic pH. Using native PAGE, 2D NMR, circular dichroism (CD) and fluorescence spectroscopy, we have characterized the two different pH dependent forms of dA(15). The pH-triggered transition between the two defined helical forms of dA(15) is characterized by CD and fluorescence. The kinetics of this conformational switch is found to occur on a millisecond time scale. This robust, highly reversible, pH-induced transition between the two well-defined structured states of dA(15) represents a new molecular building block for the construction of quick-response, pH-switchable architectures in structural DNA nanotechnology.}, author = {Chakraborty, Saikat and Sharma, Suruchi and Maiti, Prabal K. and Krishnan, Yamuna}, doi = {10.1093/nar/gkp133}, eissn = {1362-4962}, issn = {0305-1048}, journal = {NUCLEIC ACIDS RESEARCH}, month = {MAY}, number = {9}, orcid-numbers = {Maiti, Prabal/0000-0002-9956-1136 Chakraborty, Saikat/0000-0002-6307-8441}, pages = {2810-2817}, researcherid-numbers = {Maiti, Prabal/B-6335-2009 }, times-cited = {81}, title = {The poly dA helix: a new structural motif for high performance DNA-based molecular switches}, unique-id = {ISI:000266354600005}, volume = {37}, year = {2009} }